QTLMap API
Table of Contents
Sourcefiles
Index
QTLMap
Constants
Subroutines
Modules
Packages
Types
Variables
Constants
A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
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0
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1
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3
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5
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7
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9
A
ALL_LABEL_MODEL
AM_MAX
AM_MIN
ANALYSE_2QTL_INTERACTION
ANALYSE_DEV_1
ANALYSE_DEV_2
ANALYSE_MULTIRAIT
ANALYSE_MULTITRAIT_DA
ANALYSE_MULTITRAIT_INCIDENCE
ANALYSE_MULTITRAIT_INCIDENCE_LU
ANALYSE_TRAIT_COV_CONTINGENCE
ANALYSE_UNITRAIT
ANALYSE_UNITRAIT_CONTINGENCE
ANALYSE_UNITRAIT_LA
ANALYSE_UNITRAIT_LD
ANALYSE_UNITRAIT_LDJH
ANALYSE_UNITRAIT_LDLA
ANALYSE_UNITRAIT_LDLA_CROIS
ANALYSE_UNITRAIT_LINEAR_LA_HETERO
ANALYSE_UNITRAIT_LINEAR_LA_HOMO
ANALYSE_UNITRAIT_LINEAR_LD_HETERO
ANALYSE_UNITRAIT_LINEAR_LD_HOMO
ANALYSE_UNITRAIT_LINEAR_LDLA_HETERO
ANALYSE_UNITRAIT_LINEAR_LDLA_HOMO
ANALYSE_UNITRAIT_MODLIN
ANALYSE_UNITRAIT_MODLIN_COX
AP_MAX
AP_MIN
B
BC_KEYWORD
C
COMMON_ANALYSE
D
DEFAULT_PARAM_MAX
DEFAULT_PARAM_MIN
DP
E
EPS_EM
F
F2_KEYWORD
FMT_INT
FMT_INT_LONG
FMT_MAX_BUFFER
FMT_REAL
G
grand
I
INCIDENCE_INTERACTION
INCIDENCE_TRAIT_COV
INCIDENCE_TYPE_CLASSIC
INCIDENCE_TYPE_LD
INCIDENCE_TYPE_LDLA
INIFINY_REAL_VALUE
INT_NOT_DEFINED
ios_simul_file
ITER_EM_MAX
K
K_CHOLESKY
K_CHROM
K_COEFFDA
K_FREQALL
K_GENEA
K_GENOTYPE
K_GRID2QTL
K_HAPLOTYPES
K_KEY_DEV_GEN
K_LINEAR_CONV
K_LONG_MIN_IBS
K_LONGHAP
K_LRTDAM
K_LRTSIRE
K_MAP
K_MATEFF
K_MAX_LINEAR_ITERATION
K_MINDAMPHASEPROB
K_MINSIREPHASEPROB
K_MODEL
K_NB_HAPLO_PRIOR
K_NDMIN
K_OPTIM_H_PREC
K_OPTIM_MAXEVAL
K_OPTIM_MAXTIME
K_OPTIM_TOLF
K_OPTIM_TOLG
K_OPTIM_TOLX
K_OUTPUT
K_OUTSIM
K_PARAMSIM
K_PATEFF
K_PDECPLE
K_PDED
K_PHASES
K_PHASES_OFFSPRING
K_PHASES_OFFSPRING_MARK_END
K_PHASES_OFFSPRING_MARK_START
K_PROB_HAPLO_MIN
K_PROB_SEUIL_RECOMB
K_PSEUILHWE
K_RACE
K_STEP
K_SUMM
K_THRES_CONFUSION
K_TRAITS
K_UNKNOWN_GENO
KIND_PHENO
L
LABEL_GENEALOGY
LABEL_MARKERS
LABEL_NAME_TRAIT
LABEL_QTL
LABEL_SIMULTRAITS
LABEL_TRAITS
LEN_BUFFER_LINE
LEN_BUFFER_WORD
LEN_DEF
LEN_L
LEN_LINE
LEN_OPT
LEN_S
LEN_W
LENGTH_MAX_FILE
LIBNAG_AVAILABLE
LINEAR_HETEROSCEDASTIC
LINEAR_HOMOSCEDASTIC
M
MARG_HELP
MAX_CAS_ALLOC
MAX_FILES_INPUT
MAX_KD_PRINT
MAX_MARKER
MAX_QTL
MAX_SIZE_MAP
MAXCAR
MAXNB_KEY_DEV_GEN
N
NB_DES_MIN
NQTL_DEFAULT
NSIM_DEFAULT
NUMBER_ALL_KEYS
NUMBER_AUTO_KEYS
NUMBER_OPT_KEYS
O
OPT_CALCUL
OPT_CENSORED_CALCUL
OPT_CLASSIC
OPT_DEBUG
OPT_DEBUG_SHORT
OPT_EQTL
OPT_ESTIME_THRESHOLDS
OPT_ESTIME_THRESHOLDS_SHORT
OPT_FAM
OPT_FAM_MULTI
OPT_FAM_SIRE
OPT_HAPLOTYPE
OPT_HDAM
OPT_HELP
OPT_HELP_PANALYSE
OPT_HELP_PARAMSIM
OPT_NOPOLY
OPT_NSIM
OPT_OPTIM
OPT_PERMUT
OPT_PRINT_CLASSIC
OPT_QTL
OPT_QUIET
OPT_QUIET_SHORT
OPT_SIB_FS
OPT_SIB_HS
OPT_SIBF
OPT_SIM
OPT_SNP
OPT_VERBOSE
OPT_VERBOSE_SHORT
OPT_XML
OPTI_LAST
OPTI_LBFGS
OPTI_NAG
OPTIM_DEFAULT
OPTIM_HETEROSCEDASTIC
OUTBRED_KEYWORD
R
REAL_NOT_DEFINED
S
SIB_DEFAULT
SIG_MAX
SIG_MIN
SIMULATION
STRING_NOT_DEFINED
T
TRANSCIPTOME_ANALYSE
TYPE_DATA_CONTINUE
TYPE_DATA_COX
U
unit_genotype
unit_mod
unit_perf
V
VAL_MAX_INDEX_PHENO
VAL_MIN_INDEX_PHENO
VERSION_HAPLOTYPE_PARENTAL_EXTERNAL
VERSION_HAPLOTYPE_SNP
VERSION_HAPLOTYPE_SNP_PRINT
VERSION_HAPLOTYPE_SYMMAX2SAT_SNP
VERSION_HAPLOTYPE_V1
VERSION_HAPLOTYPE_V2
VERSION_HAPLOTYPE_V3
X
XMU_MAX
XMU_MIN
A
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B
-
C
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D
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E
-
F
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G
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H
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I
-
J
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K
-
L
-
M
-
N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
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0
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1
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2
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3
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4
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5
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6
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7
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8
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9