Snakemake¶

• snakemake with DRMAA
  

  export DRMAA_LIBRARY_PATH="/tools/libraries/slurm-drmaa/slurm-drmaa-1.0.7/lib/libdrmaa.so" 
  snakemake --jobs 30 --cluster-config cluster.yaml --drmaa " --mem-per-cpu={cluster.mem}000 --mincpus={threads} --time={cluster.time} -J {cluster.name} -N 1=1" --configfile config.yaml -n -p 
  

Un exemple de fichier cluster.yaml

__default__:
  mem: 8
  name: "{rule}.{wildcards}" 
  time: "24:00:00" 

delly:
  mem: 16
  time: "36:00:00"