04/29/2020 08:49 AM
This version of VarEff package contains also the function TMRCA (Temporal Most Recent Ancestral) to estimate the time of detected bottleneck.
Two manuals are available:
- Detailed Manual (classical CRAN manual)
- Summary to start and to use VarEff (description of all steps to use VarEff)
03/24/2020 05:37 PM
The function BTlike (Bottleneck likelihood) uses the file.Batch (produced by the package VarEff) and works with R software. The function BTlike estimates the likelihood frequency of a bottleneck detected from previous analyses (NTdist and TMRCA functions from VarEff package).